Protein separations with w415,416
I recently set up 24 hour diffusion separations with the BioRad protein standards. The following gel shows the separations using w415 position (-4,3) and w416 (-1,3). Different cutoffs were observed with the two membranes.

Looks pretty good. 1) Are there enough membranes to do this by convection? 2) We need to get pore size histograms to see if these make sense. Dave are you going to upload images to the TEM directoy?
We do not currently have enough membranes to study convection. We’ll have to put 2 wafers aside for me to do two cutoffs in both diffusion and flow modes.
I’ve taken images on Brian’s TEM (wafer 415, wafer 416), but the images have low contrast and the pore processing program can’t pick up the features. I’ve scheduled some time with Karen on Wednesday and will put pictures up along with statistics at that time.
Remind me about the protocol again. 1x PBS with 3uL on top, 40uL on the bottom, then the retentate is diluted to the volume of the filtrate?
These gels look very nice with relatively sharp cutoffs and depletion of the small proteins. Do we know what each of these are? Interestingly 415 has a cutoff near 50nm and 416 has cutoff of maybe 60nm, based on the posted images. I would have expected everything to just diffuse through such large pores…
2uL of sample in the well, 60uL of 1xPBS in reservoir. 58uL are added to the retentate.
We know all the proteins in this gel. The one not appearing in the retentate of the first gel is hen egg white lysozyme (HEWL).