Flipped sample discoloration in Sepcon
We have seen before that in petri dishes, flipped samples (well side up) discolor faster as compared to the ‘membrane side up’ samples. This could be due to local environment trapped below the chip. Hence, I used Sepcon format so that the sample is raised above the floor to avoid any trapped solution below it. To start with, the W 703 samples (no RTP) had broken membranes and were immersed in DMEM (-FBS) @ RT. Its observed that the sample with well side up (flipped sample) didn’t discolor as fast as the membrane side up chip. This is exactly the opposite of what we see in case of petri dishes (post1, post2). Considering this, it seems that orientation of the chip doesn’t effect discoloration. But its strange that there is such a contrasting difference between the two discolorations. Is it that keeping membrane side down in Sepcon helps delaying discoloration?
PS: The pretty discoloration art in the left sample!

I don’t think we can conclude that the orientation doesn’t affect discoloration yet. There seems to be something special about Sepcon that we haven’t figured out yet. Were the previous experiments also done with broken slits?
Yes I agree. The samples in the dishes were with broken slits whereas the first try with Sepcon compared discoloration in broken and intact slit samples.